Whole genome sequencing of T pallidum: Illumina MiSeq paired end sequ... - SRA

SRX24547607: Whole genome sequencing of T pallidum: Illumina MiSeq paired end sequencing
1 ILLUMINA (Illumina MiSeq) run: 3.3M spots, 915.9M bases, 302.7Mb downloads

Design: Hybrid selection based on TPA genome

Submitted by: University of North Carolina at Chapel Hill

Study: Treponema pallidum genomic sequencing

PRJNA815321 • SRP364025 • All experiments • All runs

show Abstracthide Abstract

We are sequencing Treponema pallidum DNA isolated from subjects enrolled from geographically diverse global sites as part of an NIH/NIAID Cooperative Agreement to support syphilis vaccine development (U19AI144177) and a complementary Bill and Melinda Gates Foundation-supported syphilis genetic epidemiology project. Most samples were directly sequenced from genital ulcer chancre swabs or skin biopsies. Whole-genome sequencing was performed using Illumina sequencing after T. pallidum enrichment using Agilent RNA baits +/- pooled, parallel whole-genome amplification.

Sample: Treponema pallidum subsp. pallidum clinical isolate TPVCN053L1

SAMN41394443 • SRS21291866 • All experiments • All runs

Organism: Treponema pallidum

Library:

Name: TPVCN053L1

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Runs: 1 run, 3.3M spots, 915.9M bases, 302.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR29022028	3,286,630	915.9M	302.7Mb	2024-05-14

ID:: 32865465

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity